As I've mentioned in the PM, it works fine here. Cloned your environment and the example file pops up for fixing and clicking yes works flawlessly.
You've mentioned that you took the hd from an older system so I though it might be related to user access rights somehow. You've said something about "it was utf8 then ntfs". Can you go a bit into details here please? Because utf8 isn't a filesystem format like ntfs. Any information about the hd (which format), possible user access rights etc could be helpful.
Also you may want to turn off virusscanners and other 3rd party tools for a quick test only. Maybe copying some of the 'crashing files' on a different harddisk gives some positive or negative feedback...
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I've played a bit with access rights on files (e.g. not allowing write operations etc) but even then it doesn't crash and simply shows messages like Can't remove files from: E:\Emulation\Roms\Mame\48in1.zip etc...
So...everything's fine here

...and noone else reported such a thing yet (and removing files it one of the most common things)...so I somehow have your taken-over-hd in mind...but currently no idea what's causing a crash.
If you google the error message you will find things like:
https://social.technet.microsoft.com/Forums/en-US/307ccfcb-a815-4a82-9c66-d901990708f4/uev-causes-explorerexe-crash?forum=mdopuevso..that's an example where Microsoft UE-V (User Experience Virtualization) causes crashes even in its own explorer...so that's why I'm asking for possible 3rd party tools interfearing..
So...any synching tool running on your PC?